SNP Prediction Scripts for Rare and Ultra-Rare Diseases

Abstract

Two Python scripts are provided in this repository: rare.py: designed to predict SNPs associated with rare diseases. ultra_rare.py: designed to predict SNPs associated with ultra-rare diseases. Requirements To run the scripts, the following Python libraries are required: Script 1 (rare.py):pandas, numpy, scikit-learn, matplotlib, seaborn Script 2 (ultra_rare.py):pandas, numpy, scikit-learn, matplotlib, seaborn, tqdm, sentence-transformers Notes The input files containing positive SNPs and negative SNPs must be provided by the user. The feature variables used for model training should be adapted according to the disease under study.